Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs11784287 chr8:12678315 C/T 3.72E-8 374 22.73 20.9 3.25 KM Plot
CRC rs11802769 chr1:74837300 A/G 0 370 22.3 23.83 0.82 KM Plot
CRC rs11877522 chr18:22144236 C/T 0 374 22.37 21.6 1.63 KM Plot
CRC rs11913210 chr22:50195192 T/C 4.34E-5 368 22.38 21.53 10.07 KM Plot
CRC rs12047931 chr1:6587614 C/T 2.5E-5 364 22.33 22.73 10.75 KM Plot
CRC rs12112577 chr7:57826143 C/T 1.71E-6 369 23.3 20.58 11.92 KM Plot
CRC rs12210160 chr6:161814907 A/G 2.62E-6 371 22.4 19.88 9.4 KM Plot
CRC rs12302697 chr12:117898673 G/A 5.0E-5 369 21.7 24.2 24.62 KM Plot
CRC rs12320449 chr12:117888284 G/A 6.07E-6 366 21.9 24.33 16.03 KM Plot
CRC rs12482002 chr21:47578251 C/A 8.88E-16 364 22.2 32.43 3.07 KM Plot
CRC rs12603621 chr17:26332718 A/G 1.44E-5 369 21.43 25.53 16.47 KM Plot
CRC rs12652173 chr5:54586715 T/C 4.95E-5 371 22.32 23.43 9.67 KM Plot
CRC rs12652266 chr5:54652219 T/C 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs12652515 chr5:54680145 G/A 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs12652531 chr5:54680221 G/A 6.03E-5 373 22.32 23.43 9.67 KM Plot